Publications@PED

All publications affiliated with PED


2003 2004 2005 2006 2007 2008

    2003

  1. Frank SA, Y Iwasa, MA Nowak (2003). Patterns of cell division and the risk of cancer. Genetics 163: 1527-1532. (PDF)
  2. Frank SA, MA Nowak (2003). Developmental predisposition to cancer. Nature 422: 494. (PDF)
  3. Hudson R R, Turelli M (2003). Stochasticity overrules the "three-times rule": Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution 57: 182-190.
  4. Iwasa Y, F Michor, MA Nowak (2003). Evolutionary dynamics of escape from biomedical intervention. Proc R Soc B 270: 2573-2578. (PDF)
  5. Jones AG, SJ Arnold, R Bürger (2003). Stability of the G-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift. Evolution 57: 1747-1760. (PDF)
  6. Komarova NL, MA Nowak (2003). Language dynamics in finite populations. J theor Biol 221: 445-457. (PDF)
  7. Komarova NL, MA Nowak (2003). Language, learning and evolution. In Language Evolution, eds. MH Christiansen, S Kirby. Oxford: Oxford University Press, 317-337.
  8. Komarova NL, A Sengupta, MA Nowak (2003). Mutation-selection networks of cancer initiation: Tumor suppressor genes and chromosomal instability. J theor Biol 223: 433-450. (PDF)
  9. Lorenz A, J Fuchs, R Bürger, J Loidl (2003). Chromosome pairing does not contribute to nuclear architecture in vegetative yeast cells. Eukaryotic Cell 2: 856-866. (PDF)
  10. Michor F, SA Frank, RM May, Y Iwasa, MA Nowak (2003). Somatic selection for and against cancer. J theor Biol 225: 377-382. (PDF)
  11. Michor F, Y Iwasa, NL Komarova, MA Nowak (2003). Local regulation of homeostasis favors chromosomal instability. Curr Biol 13: 581-584. (PDF)
  12. Michor F, MA Nowak, SA Frank, Y Iwasa (2003). Stochastic elimination of cancer cells. Proc R Soc B 270: 2017-2024. (PDF)
  13. Mitchener G, MA Nowak (2003). Competitive exclusion and coexistence of universal grammars. B Math Biol 65: 67-93. (PDF)
  14. Nowak MA, F Michor, Y Iwasa (2003). The linear process of somatic evolution. P Natl Acad Sci USA 100: 14966-14969. (PDF)
  15. Rajagopalan H, MA Nowak, B Vogelstein, C Lengauer (2003). The significance of unstable chromosomes in colorectal cancer. Nat Rev Cancer 3: 695-701. (PDF)
  16. Sasaki A, MA Nowak (2003). Mutation landscapes. J theor Biol 224: 241-247. (PDF)
  17. Wei X, JM Decker, S Wang, H Hui, JC Kappes, W Xiaoyun, JF Salazar, MG Salazar, JM Kilby, MS Saag, NL Komarova, MA Nowak, BH Hahn, PD Kwong, GM Shaw (2003). Antibody neutralization and escape by HIV-1. Nature 422: 307-312. (PDF)
  18. Willensdorfer M, R Bürger (2003). The two-locus model of Gaussian stabilizing selection. Theor Popul Biol 64: 101-117. (PDF)

    19. 2004

  19. Barton NH, M Turelli (2004). Effects of genetic drift on variance components under a general model of epistasis. Evolution 58: 2111-2132.
  20. Boots M, PJ Hudson, A Sasaki (2004). Large shifts in pathogen virulence relate to host population structure. Science 303: 842-845.
  21. Bürger R, A Gimelfarb (2004). The effects of intraspecific competition and stabilizing selection on a polygenic trait. Genetics 167: 1425-1443. (PDF)
  22. Bürger R, C Krall (2004). Quantitative genetic models and changing environments. In Evolutionary Conservation Biology, eds. R Ferriere, U Dieckmann, D Couvet. Cambridge: Cambridge University Press, 171-186.
  23. Doebeli M, C Hauert, T Killingback (2004). The evolutionary origin of cooperators and defectors. Science 306: 859-862. (PDF) (supplementary material)
  24. Frank SA (2004). Age-specific acceleration of cancer. Curr Biol 14: 242-246. (PDF)
  25. Frank SA, MA Nowak (2004). Problems of somatic mutation and cancer. Bioessays 26: 291-299. (PDF)
  26. Frankham, R (2004). Evolutionary conservation genetics. In Evolutionary Genetics: Concepts and Case Studies, eds. CW Fox, JB Wolf. New York: Oxford University Press.
  27. Frankham R, JD Ballou, DA Briscoe (2004). A Primer of Conservation Genetics. Cambridge: Cambridge University Press.
  28. Frankham R, BW Brook (2004). The importance of time scale in conservation biology and ecology. Annales Zoologici Fennici 41: 459-463. (PDF)
  29. Frankham R, JG Kingslover (2004). Adaptation and extinction: The empirical view. In Evolutionary Conservation Biology, eds. R Ferriere, U Dieckmann, D Couvet. Cambridge: Cambridge University Press.
  30. Ganapathy G, V Ramachandran, T Warnow (2004). On contract-and-refine-transformations between phylogenetic trees. In Proceedings of the Fifteenth ACM-SIAM Symposium on Discrete Logorithms (SODA), 893-902. (PDF)
  31. Iwasa Y, F Michor, MA Nowak (2004). Evolutionary dynamics of invasion and escape. J theor Biol 226: 205-214. (PDF)
  32. Iwasa Y, F Michor, MA Nowak (2004). Some basic properties of immune selection. J theor Biol 229: 179-188. (PDF)
  33. Iwasa Y, F Michor, MA Nowak (2004). Stochastic tunnels in evolutionary dynamics. Genetics 166: 1571-1579. (PDF)
  34. Jones AG, SJ Arnold, R Bürger (2004). Evolution and stability of the G-matrix on a landscape with a moving optimum. Evolution 58: 1639-1654. (PDF)
  35. Jones NA, X Wei, D Flower, M Wong, F Michor, M Saag, B Hahn, M Nowak, G Shaw (2004). Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic Y lymphocyte response. J Exp Math 200: 1243-1256. (PDF)
  36. Matsen E, MA Nowak (2004). Win-stay, lose-shift in language learning from peers. P Natl Acad Sci USA 101: 18053-18057. (PDF)
  37. Michor F, Y Iwasa, MA Nowak (2004). Dynamics of cancer progression. Nat Rev Cancer 4: 197-205. (PDF)
  38. Michor F, Y Iwasa, H Rajagopalan, C Lengauer, MA Nowak (2004). Linear model of colon cancer initiation. Cell Cycle 3: 358-362. (PDF)
  39. Mitchener WG, MA Nowak (2004). Chaos and language. Proc R Soc B 271: 701-704. (PDF)
  40. Moret BME, L Nakhleh, T Warnow, CR Linder, A Tholse, A Padolina, J Sun, R Timme (2004). Phylogenetic networks: Modeling, reconstructibility, and accuracy. IEEE T Comput Biol Biocomp 1: 13-23. (PDF)
  41. Moret BME, U Roshan, T Warnow, TL Williams (2004). Performance of supertree methods on various dataset decompositions. In Phylogenetic Supertrees, ed. ORP Bininda-Edmonds. Dordrecht, Netherlands: Kluwer Academic Publishers, 301-328. (PDF)
  42. Nakhleh L, T Warnow, CR Linder (2004). Reconstructing reticulate evolution in species -- theory and practice. In Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology (RECOMB), 337-346. (PDF)
  43. Nowak MA (2004). Prisoners of the dilemma. Nature 427: 491. (PDF)
  44. Nowak MA (2004) Theory is available light. Curr Biol 14: R406-R407.(PDF)
  45. Nowak MA, F Michor, Y Iwasa (2004). Evolutionary dynamics of tumor suppressor gene inactivation. P Natl Acad Sci USA 101: 10635-10638. (PDF).
  46. Nowak MA, A Sasaki, C Taylor, D Fudenberg (2004). Emergence of cooperation and evolutionary stability in finite populations. Nature 428: 646-650. (PDF)
  47. Nowak MA, K Sigmund (2004). Evolutionary dynamics of biological games. Science 303: 793-799. (PDF)
  48. Nowak MA, K Sigmund (2004). Population dynamics in evolutionary ecology. In Life Sciences for the 21st Century, eds. E Keinan, I Schechter, M Sela. Weinheim: Wiley-VCH Verlag GmbH & Co.
  49. O'Grady JJ, MA Burgman, DA Keith, LL Master, SJ Andelman, BW Brook, GA Hammerson, T Regan, R Frankham (2004). Correlations among extinction risks assessed by different systems of threatened species categorization. Conserv Biol 18: 1624-1635. (PDF)
  50. O'Grady JJ, DH Reed, BW Brook, R Frankham (2004). What are the best correlates of predicted extinction risk? Biol Conserv 118: 513-520.
  51. Reed DH, JJ O'Grady, BW Brook, JD Ballou, R Frankham (2004). Large estimates of minimum viable population sizes. Conserv Biol 18: 1179.
  52. Roshan U, BME Moret, TL Williams, T Warnow (2004). Rec-I-DCM3: A fast algorithmic technique for reconstructing large phylogenetic trees. In Proceedings of the IEEE Computer Society Bioinformatics Conference CSB 2004. Stanford: Stanford University Press. (PDF)
  53. Spielman D, BW Brook, R Frankham (2004). Does inbreeding and loss of genetic diversity decrease disease resistance? Conserv Gen 5: 439-448.
  54. Spielman D, BW Brook, R Frankham (2004). Most species are not driven to extinction before genetic factors impact them. P Natl Acad Sci USA 101: 15261-15264. (PDF)
  55. Taylor C, D Fudenberg, A Sasaki, MA Nowak (2004). Evolutionary game dynamics in finite populations. B Math Biol 66: 1621-1644. (PDF)
  56. Turelli M, NH Barton (2004). Polygenic variation maintained by balancing selection: Pleiotropy, sex-dependent allelic effects and G x E interactions. Genetics 166: 1053-1079. (PDF)
  57. Wang L, T Warnow (2004). Distance-based genome rearrangement phylogeny. In Mathematics of Evolution and Phylogeny, ed. O Gascuel. Oxford: Oxford University Press. (PDF)
  58. Warnow T, SN Evans, D Ringe, L Nakhleh (2004). Stochastic models of language evolution and an application to the Indo-European family of languages. In Proceedings of the Conference on Phylogenetic Methods and the Prehistory of Languages. Cambridge: Cambridge University Press. (PDF)
  59. Whitlock MC, R Bürger (2004). The good, the bad, and the ugly: Fixation of new mutations in small populations. In Evolutionary Conservation Biology, eds. R Ferriere, U Dieckmann, D Couvet. Cambridge: Cambridge University Press.
  60. Wodarz D, N Komarova, Y Iwasa (2004). On the emergence of multifocal cancers. J Carcinogenesis 3: 13. (PDF)

    61. 2005

  61. Bürger R (2005). A multilocus analysis of intraspecific competition and stabilizing selection on a quantitative trait. J Math Biol 50: 355-396. (PDF)
  62. Boeckx C, M Piattelli-Palmarini (2005). Language as a natural object, linguistics as a natural science. Linguist Rev 22: 351-370.
  63. Brown WM, L Cronk, K Grochow, A Jacobson, CK Liu, Z Popovik, R Trivers (2005). Dance reveals symmetry especially in young men. Nature 438: T148-T150. (PDF)
  64. Claussen J, Traulsen A (2005). Nongaussian fluctuations arising from finite populations: Exact results for the evolutionary Moran process. Phys Rev E 71: 025101. (PDF)
  65. Doebeli M, C Hauert (2005). Models of cooperation based on the Prisoner’s Dilemma and the Snowdrift game. Ecol Lett 8: 748-766. (PDF)
  66. Feugier FG, A Mochizuki, Y Iwasa (2005). Self-organizing formation of vascular system of plant leaves: Co-orientation between auxin flux and pump proteins. J theor Biol 236: 366-375.
  67. Gerhart J, C Lowe, M Kirschner (2005). Hemichordates and the origin of chordates. Curr Opin Genet Dev 15: 461-467.
  68. Gilligan DM, DA Briscoe, R Frankham (2005). Comparative losses of quantitative and molecular genetic variation in finite populations of Drosophila melanogaster. Genet Res 85: 47-55.
  69. Hale J, EP Stabler (2005). Strict deterministic aspects of minimalist grammars. In Logical Aspects of Computational Linguistics, ed. P Blache et al. Springer LNCS-3492, 162-176. (PDF)
  70. Hauert C, G Szabó (2005). Game theory and physics. Am J Phys 73: 405-414. (PDF)
  71. Imhof LA (2005). Evolutionary game dynamics under stochastic influences. Jahresbericht der DMV 107: 197-213.
  72. Imhof LA (2005). The long-run behavior of the stochastic replicator dynamics. Ann Appl Probab 15: 1019-1045.
  73. Imhof LA, D Fudenberg, MA Nowak (2005). Evolutionary cycles of cooperation and defection. P Natl Acad Sci USA 102: 10797-10800. (PDF)
  74. Imhof LA, S Walcher (2005). Exclusion and persistence in deterministic and stochastic chemostat models. J Differ Equations 217: 26-53.
  75. Iwasa Y, F Michor, NL Komarova, MA Nowak (2005). Population genetics of tumor suppressor genes. J theor Biol 233: 15-23. (PDF)
  76. Iwasa Y, F Michor, MA Nowak (2005). Virus evolution within patients increases pathogenicity. J theor Biol 232: 17-26. (PDF)
  77. Keenan EL, EP Stabler (2005). Linguistic invariants and language variation. In Logic, Methodology and Philosophy of Science, ed. P Hajek et al. London: Kings College Publications, 395-411.
  78. Kirschner MW, JC Gerhart (2005). The Plausibility of Life: Resolving Darwin’s Dilemma. New Haven: Yale University Press.
  79. Lee Y, T Collier, C Taylor, EP Stabler (2005). The role of population structure in language evolution. In Proceedings of the 10th International Symposium on Artificial Life and Robotics. (PDF)
  80. Lee Y, T Collier, EP Stabler, C Taylor (2005). Grammar structure and the dynamics of language evolution. In Proceedings of the 8th European Conference on Artificial Life. (PDF)
  81. Lieberman E, C Hauert, MA Nowak (2005). Evolutionary dynamics on graphs. Nature 433: 312-316. (PDF)
  82. Michor F (2005). Chromosomal instability and human cancer. Proc R Soc B 360: 631-635.
  83. Michor F, TP Hughes, Y Iwasa, S Branford, NP Shah, CL Sawyers, MA Nowak (2005). Dynamics of chronic myeloid leukemia. Nature 435: 1267-1270. (PDF)
  84. Michor F, Y Iwasa, C Lengauer, MA Nowak (2005). Dynamics of colorectal cancer. Semin Cancer Biol 15: 484-493. (PDF)
  85. Michor F, Y Iwasa, C Lengauer, B Vogelstein, MA Nowak (2005). Can chromosomal instability initiate tumorigenesis? Semin Cancer Biol 15: 43-49. (PDF)
  86. Michor PW, D Mumford (2005). Vanishing geodesic distance on spaces of submanifolds and diffeomorphisms. Documenta Math 10: 217-245. (PDF)
  87. Moret BME, J Tang, T Warnow (2005). Reconstructing phylogenies from gene-content and gene-order data. In Mathematics of Evolution and Phylogeny, ed. O Gascuel. Oxford: Oxford University Press, 321-352.
  88. Nakamaru M, Y Iwasa (2005). The evolution of altruism by costly punishment in the lattice structured population: Score-dependent viability versus score-dependent fertility. Evol Ecol Rev 7: 853-870.
  89. Nakhleh L, D Ringe, T Warnow (2005). Perfect phylogenetic networks: A new methodology for reconstructing the evolutionary history of natural languages. Language 81: 382-420. (PDF)
  90. Nowak MA, NL Komarova (2005). The evolution of altruism: From game theory to human language. In Spiritual Information, ed. CL Harper Jr. Templeton Foundation Press, 308-314.
  91. Nowak MA, K Sigmund (2005). Evolution of indirect reciprocity. Nature 427: 1291-1298. (PDF)
  92. Satake A, ON Bjornstad, Y Iwasa (2005). Invasibility of seed predators on synchronized and intermittent seed production of host plants. In Conceptual Ecology and Invasions Biology: Reciprocal Approaches to Nature, ed. MW Cadotte, SM McMahon, T Fukami. Kluwer, Netherlands: Kluwer Academic Press, 281-298.
  93. Slade P, J Wakeley (2005). The structured ancestral selection graph and the many-demes limit. Genetics 169: 1117-1131. (PDF)
  94. Traulsen A, JC Claussen, C Hauert (2005). Coevolutionary dynamics: From finite to infinite populations. Phys Rev Lett 95: 238701. (PDF)
  95. Traulsen A, AM Sengupta, MA Nowak (2005). Stochastic evolutionary dynamics on two levels. J theor Biol 235: 393-401. (PDF)
  96. Trivers R (2005). Reciprocal altruism: 30 years later. In Cooperation in Primates and Humans: Mechanisms and Evolution, ed. CP van Schaik, PM Kappeler. Berlin: Springer-Verlag, 67-83.
  97. Wakeley J (2005). The limits of theoretical population genetics. Genetics 169: 1-7. (PDF)
  98. Wedekind C, R Müller (2005). Risk-induced hatching in salmonids. Ecology 86: 2525-2529. (PDF)
  99. Wedekind C, R Müller (2005). The hatchery. B Ecol Soc USA 86: 124-125. (PDF)
  100. Wedekind C, M Walker, TJ Little (2005). The course of malaria in mice: MHC effects, but no general MHC heterozygote advantage in single-strain infections. Genetics 170: 1427-1430. (PDF)
  101. Willensdorfer M, MA Nowak (2005). Mutation in evolutionary games can increase average fitness at equilibrium. J theor Biol 237: 355-362. (PDF)

    102. 2006

  102. Abbott LH, F Michor (2006). Mathematical models of targeted cancer therapy. Brit J Cancer 95: 1136-1141. (PDF)
  103. Antal T, PL Krapivsky (2006). Flows on graphs with random capacities. Phys Rev E 74: 051110. (PDF)
  104. Brandt H, C Hauert, K Sigmund (2006). Punishing and abstaining for public goods. P Natl Acad Sci USA 103: 495-497. (PDF)
  105. Bürger R, KA Schneider (2006). Intraspecific competitive divergence and convergence under assortative mating. Am Nat 167: 190-205. (PDF)
  106. Bürger R, KA Schneider, M Willensdorfer (2006). The conditions for speciation through intraspecific competition. Evolution 60: 2185-2206.
  107. Bürger R, M Willensdorfer, MA Nowak (2006). Why are phenotypic mutation rates much higher than genotypic mutation rates? Genetics 172: 197-206. (PDF)
  108. Boeckx C (2006). Linguistic Minimalism: Origins, Concepts, Methods, and Aims. Oxford/New York: Oxford University Press.
  109. Burt A, R Trivers (2006). Genes in Conflict: The Biology of Selfish Genetic Elements. Cambridge, MA: Harvard University Press.
  110. Dingli D, F Michor (2006). Successful therapy must eradicate cancer stem cells. Stem Cells 24: 2603-2610.
  111. Dingli D, MA Nowak (2006). Infectious tumor cells. Nature 443: 35-36. (PDF)
  112. Dingli D, JM Pacheco (2006). Allometric scaling of the active hematopoietic stem cell pool across mammals. PLoS ONE 1: e2. (PDF)
  113. Doebeli M, C Hauert (2006). The Limits of Hamilton's rule. J Evol Biol 19: 1386-1388. (PDF)
  114. Eldon B, J Wakeley (2006). Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172: 2621-2633.
  115. Evans SN, D Ringe, T Warnow (2006). Inference of divergence times as a statistical inverse problem. In Phylogenetic Methods and the Prehistory of Languages, ed. P Forster, C Renfrew. Series eds. C Scarre, DA Kemp. McDonald Institute for Archaeological Research/University of Cambridge, 119-129. (PDF)
  116. Foster KR (2006). The Phoenix effect. Nature 441: 291-292. (PDF)
  117. Fudenberg D, LA Imhof (2006). Imitation processes with small mutations. J Econ Theory 131: 251–262.
  118. Fudenberg D, MA Nowak, C Taylor, LA Imhof (2006). Evolutionary game dynamics in finite populations with strong selection and weak mutation. Theor Popul Biol 70: 352-363. (PDF)
  119. Ghirlanda S, M Enquist, M Nakamaru (2006). Cultural evolution develops its own rules: The rise of conservatism and persuasion. Curr Anthro 47: 1027-1034. (PDF)
  120. Haig D (2006). Intragenomic politics. Cytogenet Genome Res 113: 68-74.
  121. Haig D (2006). Self-imposed silence: Parental antagonism and the evolution of X-chromosome inactivation. Evolution 60: 440-447.
  122. Hauert C (2006). Spatial effects in social dilemmas. J theor Biol 240: 627-636. (PDF)
  123. Hauert C, M Holmes, M Doebeli (2006). Evolutionary games and population dynamics: Maintenance of cooperation in public goods games. Proc R Soc B 273: 2565-2570. (PDF) Corrigendum
  124. Hauert C, F Michor, MA Nowak, M Doebeli (2006). Synergy and discounting of cooperation in social dilemmas. J theor Biol 239: 195-202. (PDF)
  125. Imhof LA, MA Nowak (2006). Evolutionary game dynamics in a Wright-Fisher process. J Math Biol 52: 667-681. (PDF)
  126. Iwasa Y, MA Nowak, F Michor (2006). Evolution of resistance during clonal expansion. Genetics 172: 2557-2566. (PDF)
  127. Matsen FA, J Wakeley (2006). Convergence to the island-model coalescent process in populations with restricted migration. Genetics 172: 701-708. (PDF)
  128. Michor F, Y Iwasa, MA Nowak (2006). The age incidence of chronic myeloid leukemia can be explained by a one-mutation model. P Natl Acad Sci USA 103: 14931-14934. (PDF)
  129. Michor F, MA Nowak, Y Iwasa (2006). Evolution of resistance to cancer therapy. Curr Pharm Design 12: 261-271. (PDF)
  130. Michor F, MA Nowak, Y Iwasa (2006). Stochastic dynamics of metastasis formation. J theor Biol 240: 521-530. (PDF)
  131. Michor PW, D Mumford (2006). Riemannian geometries on spaces of plane curves. J Eur Math Soc 8: 1-48. (PDF)
  132. Nowak MA (2006). Evolutionary Dynamics. Cambridge, MA: Harvard University Press.
  133. Nowak MA (2006). Five rules for the evolution of cooperation. Science 314: 1560-1563. (PDF)
  134. Nowak MA, F Michor, Y Iwasa (2006). Genetic instability and clonal expansion. J theor Biol 241: 26-32. (PDF)
  135. Ohtsuki H, C Hauert, E Lieberman, MA Nowak (2006). A simple rule for the evolution of cooperation on graphs and social networks. Nature 441: 502-505. (PDF) (supplementary information)
  136. Ohtsuki H, Y Iwasa (2006). The leading eight: Social norms that can maintain cooperation by indirect reciprocity. J theor Biol 239: 435-444.
  137. Ohtsuki H, MA Nowak (2006). Evolutionary games on cycles. Proc R Soc B 273: 2249-2256. (PDF)
  138. Ohtsuki H, MA Nowak (2006). The replicator equation on graphs. J theor Biol 243: 86-97. (PDF)
  139. Pacheco JM, A Traulsen, MA Nowak (2006). Active linking in evolutionary games. J theor Biol 243: 437-443. (PDF)
  140. Pacheco JM, A Traulsen, MA Nowak (2006). Coevolution of strategy and structure in complex networks with dynamical linking. Phys Rev Lett 97: 258103. (PDF)
  141. Pfeiffer T, MA Nowak (2006). Climate change: All in the game. Nature 441: 583-584. (PDF)
  142. Pfeiffer T, MA Nowak (2006). Digital cows grazing on digital grounds. Curr Biol 16: R946-R949. (PDF)
  143. Rülicke T, N Guncz, C Wedekind (2006). Early maternal investment in mice: No evidence for 'compatible-genes' sexual selection despite hybrid vigor. J Evol Biol 19: 922-928.
  144. Santos FC, JM Pacheco, T Lenaerts (2006). Cooperation prevails when indviduals adjust their social ties. PLoS Comput Biol 2: e140. (PDF)
  145. Santos FC, JM Pacheco, T Lenaerts (2006). Evolutionary dynamics of social dilemmas in structured heterogeneous populations. P Natl Acad Sci USA 103: 3490–3494. (PDF)
  146. Taylor C, Y Iwasa, MA Nowak (2006). A symmetry of fixation times in evolutionary dynamics. J theor Biol 243: 245-251. (PDF)
  147. Taylor C, MA Nowak (2006). Evolutionary game dynamics with non-uniform interaction rates. Theor Popul Biol 69: 243-252. (PDF)
  148. Traulsen A, JC Claussen, C Hauert (2006). Coevolutionary dynamics in large but finite populations. Phys Rev E 74: 011901. (PDF)
  149. Traulsen A, MA Nowak (2006). Evolution of cooperation by multilevel selection. P Natl Acad Sci USA 103: 10952-10955. (PDF)
  150. Traulsen A, MA Nowak, J Pacheco (2006). Stochastic dynamics of invasion and fixation. Phys Rev E 74: 011909. (PDF)
  151. Traulsen A, JM Pacheco, L Imhof (2006). Stochasticity and evolutionary stability. Phys Rev E 74: 021905. (PDF)
  152. Trivers R, JT Manning, A Jacobson (2006). A longitudinal study of digit ratio (2D:4D) and other finger ratios in Jamaican children. Horm Behav 49: 150-156.
  153. Warnow T, SN Evans, D Ringe, L Nakhleh (2006). A stochastic model of language evolution that incorporates homoplasy and borrowing. In Phylogenetic Methods and the Prehistory of Languages, eds. P Forster, C Renfrew. Series eds. C Scarre, DA Kemp. McDonald Institute for Archaeological Research/University of Cambridge, 75-87. (PDF)

    154. 2007

  154. Antal T, I Bena, M Droz, K Martens, Z Racz (2007). Guiding-fields for phase-separation: Controlling liesegang patterns. Phys Rev E 76: 046203. (PDF)
  155. Antal T, KB Blagoev, SA Trugman, S Redner (2007). Aging and immortality in a cell proliferation model. J theor Biol 248: 411-417. (PDF)
  156. Antal T, PL Krapivsky (2007). Molecular spiders with memory. Phys Rev E 76: 021121. (PDF)
  157. Antal T, PL Krapivsky, K Mallick (2007). Molecular spiders in one dimension. J Stat Mech-Theory E: P08027. (PDF)
  158. Antal T, PL Krapivsky, S Redner, M Mailman, B Chakraborty (2007). Dynamics of an idealized model of microtubule growth and catastrophe. Phys Rev E 76: 041907. (PDF)
  159. Beerenwinkel N, T Antal, D Dingli, A Traulsen, KW Kinzler, VE Velculescu, B Vogelstein, MA Nowak (2007). Genetic progression and the waiting time to cancer. PLoS Comput Biol 3: e225. (PDF)
  160. Brandt H, H Ohtsuki, Y Iwasa, K Sigmund (2007). A survey of indirect reciprocity. In Mathematics for Ecology and Evolution, eds. Y Takeuchi, Y Iwasa, K Sato. Berlin: Springer, 21-50.
  161. Burnham TC (2007). High-testosterone men reject low ultimatum game offers. Proc R Soc B 274: 2327-2330. (PDF)
  162. Burnham TC, B Hare (2007). Engineering human cooperation. Hum Nat 18: 88-108. (PDF)
  163. Dingli D, F Michor, T Antal, JM Pacheco (2007). The emergence of tumor metastases. Cancer Biol Ther 6: e1-e8. (PDF)
  164. Dingli D, JM Pacheco (2007). Ontogenic growth of the haematopoietic stem cell pool in humans. Proc R Soc B 274: 2497-2501. (PDF)
  165. Dingli D, JM Pacheco, A Dispenzieri, S Hayman, S Kumar, M Lacy, D Gastineau, M Gertz (2007). In vivo and in silico studies on single versus multiple transplants for multiple myeloma. Cancer Sci 98: 734-739. (PDF)
  166. Dingli D, A Traulsen, F Michor (2007). (A)Symmetric stem cell replication and cancer. PLoS Comput Biol 3: e53. (PDF)
  167. Dingli D, A Traulsen, JM Pacheco (2007). Stochastic dynamics of hematopoietic tumor stem cells. Cell Cycle 6: e1-e6. (PDF)
  168. Dingli D, A Traulsen, JM Pacheco (2007). Compartmental architecture and dynamics of hematopoiesis. PLoS One 2: e345. (PDF)
  169. D'Orsogna MR, T Chou, T Antal (2007). Exact steady-state velocity of ratchets driven by random sequential adsorption. J Phys A: Math Theor 40: 5575-5584. (PDF)
  170. Hauert C, A Traulsen, H Brandt, MA Nowak, K Sigmund (2007). Via freedom to coercion: The emergence of costly punishment. Science 316: 1905-1907. (PDF) (supplementary information)
  171. Imhof LA, D Fudenberg, MA Nowak (2007). Tit-for-tat or win-stay, lose-shift? J theor Biol 247: 574-580. (PDF)
  172. Iwasa Y, F Michor, MA Nowak (2007). Directional evolution of virus within a host under immune selection. In Mathematics for Life Science and Medicine, eds. Y Takeuchi, Y Iwasa, K Sato. Springer: New York.
  173. Lieberman E, JB Michel, J Jackson, T Tang, MA Nowak (2007). Quantifying the evolutionary dynamics of language. Nature 449: 713-716. (PDF) Front cover. News articles: Nature News, Harvard University Gazette, Los Angeles Times, New Scientist, Scientific American, Telegraph. Nature Correspondence. 2007 favourite in Nature, more press.
  174. Lopes JV, JM Pacheco, D Dingli (2007). Acquired hematopoietic stem-cell disorders and mammalian size. Blood 110: 4120-4122. (PDF)
  175. Masuda N, H Ohtsuki (2007). Tag-based indirect reciprocity by incomplete social information. Proc R Soc B 274: 689-695. (PDF)
  176. Nowak MA, S Roch (2007). Upstream reciprocity and the evolution of gratitude. Proc R Soc B 274: 605-609. (PDF)
  177. Nowak MA, K Sigmund (2007). How populations cohere: Five rules for cooperation. In Theoretical Ecology: Principles and Applications, eds. RM May, A McLean. Oxford: Oxford University Press, 7-16. (PDF)
  178. Ohtsuki H, P Bordalo, MA Nowak (2007). The one third law of evolutionary dynamics. J theor Biol 249: 289-295. (PDF)
  179. Ohtsuki H, Y Iwasa (2007). Global analyses of evolutionary dynamics and exhaustive search for social norms that maintain cooperation by reputation. J theor Biol 244: 518-531. (PDF)
  180. Ohtsuki H, MA Nowak (2007). Direct reciprocity on graphs. J theor Biol 247: 462-470. (PDF)
  181. Ohtsuki H, J Pacheco, MA Nowak (2007). Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs. Phys Rev Lett 98: 108106. (PDF)
  182. Ohtsuki H, J Pacheco, MA Nowak (2007). Evolutionary graph theory: Breaking the symmetry between interaction and replacement. J theor Biol 246: 681-694. (PDF)
  183. Pfeiffer T, R Hoffmann (2007). Temporal patterns of genes in scientific publications. P Natl Acad Sci USA. 104: 12052-12056. (PDF)
  184. Pinker S (2007). Games people play. In The Stuff of Thought: Language as a Window Into Human Nature. New York: Viking Press.
  185. Roehl T, C Roehl, HG Schuster, A Traulsen (2007). The impact of fraud on the mean-field dynamics of cooperative social systems. Phys Rev E 76: 026114.
  186. Steiner UK, T Pfeiffer (2007). Optimizing time and resource allocation trade-offs for investment in morphological and behavioral defense. Am Nat 169: 118-129. (PDF)
  187. Taylor C, J Chen, Y Iwasa (2007). Cooperation maintained by fitness adjustment. Evol Ecol Res 9: 1023-1041. (PDF)
  188. Taylor C, MA Nowak (2007). Transforming the dilemma. Evolution 61: 2281-2292. (PDF)
  189. Traulsen A, Y Iwasa, MA Nowak (2007). The fastest evolutionary trajectory. J theor Biol 249: 617-623. (PDF)
  190. Traulsen A, MA Nowak (2007). Chromodynamics of cooperation in finite populations. PLoS ONE 2: e270. (PDF)
  191. Traulsen A, MA Nowak, J Pacheco (2007). Stochastic payoff evaluation increases the temperature of selection. J theor Biol 244: 349-356. (PDF)
  192. Traulsen A, JM Pacheco, D Dingli (2007). On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria. Stem Cells 25: 3081-3084. (PDF)
  193. Traulsen A, JM Pacheco, MA Nowak (2007). Pairwise comparison and selection temperature in evolutionary game dynamics. J theor Biol 246: 522-529. (PDF)
  194. Uehara T, Y Iwasa, H Ohtsuki (2007). ESS distribution of display duration in animal contests to assess an opponent before fighting or fleeing. Evol Ecol Res 9: 395-408. (PDF)
  195. Wild G, A Traulsen (2007). The different limits of weak selection and the evolutionary dynamics of finite populations. J theor Biol 247: 382-390.
  196. Willensdorfer M, R Bürger, MA Nowak (2007). Phenotypic mutation rates and the abundance of abnormal proteins in yeast. PLoS Comput Biol 3: e203. (PDF)
  197. Worden L, S Levin (2007). Evolutionary escape from the prisoner’s dilemma. J theor Biol 245: 411-422. (PDF)

    198. 2008

  198. Dingli D, MA Nowak (2008). Evolutionary dynamics of cancer. Book review of Dynamics of Cancer: Incidence, Inheritance, and Evolution, SA Frank. Trends Ecol Evol 23: 254-255. (PDF)
  199. Dreber A, M Johannesson (2008). Gender differences in deception. Econ Lett 99: 197-199.
  200. Dreber A, MA Nowak (2008). Gambling for global goods. P Natl Acad Sci USA 105: 2261-2262. (PDF)
  201. Dreber A, DG Rand, D Fudenberg, MA Nowak (2008). Winners don't punish. Nature 452: 348-351. (PDF) News: Daily Telegraph, NPR, New York Times, Boston Globe / AP, Bloomberg, Harvard Gazette, more press.
  202. Goldstein R, J Almenberg, A Dreber, JW Emerson, A Herschkowitsch, J Katz (2008). Do more expensive wines taste better? Evidence from a large sample of blind tastings. J Wine Econ 3: 1-9.
  203. Hauert C, JY Wakano, M Doebeli (2008). Ecological public goods games: Cooperation and bifurcation. Theor Popul Biol 73: 257-263. (PDF)
  204. Jones S, W Chen, G Parmigiani, F Diehl, N Beerenwinkel, T Antal, A Traulsen, MA Nowak, C Siegel, VE Velculescu, KW Kinzler, B Vogelstein, J Willis, SD Markowitz (2008). Comparative lesion sequencing provides insights into tumor evolution. P Natl Acad Sci USA 105: 4283-4288. (PDF)
  205. Langer P, MA Nowak, C Hauert (2008). Spatial invasion of cooperation. J theor Biol 250: 634-641. (PDF)
  206. Ohtsuki H, MA Nowak (2008). Evolutionary stability on graphs. J theor Biol 251: 698-707. (PDF)
  207. Pacheco J, A Traulsen, H Ohtsuki, MA Nowak (2008). Repeated games and direct reciprocity under active linking. J theor Biol 250: 723-731. (PDF)
  208. Peischl S, R Bürger (2008). Evolution of dominance under frequency-dependent intraspecific competition. J theor Biol 251: 210-226.
  209. Pinker S, MA Nowak, JJ Lee (2008). The logic of indirect speech. P Natl Acad Sci USA 105: 833-838. (PDF)
  210. Traulsen A, N Shoresh, MA Nowak (2008). Analytical results for individual and group selection of any intensity. B Math Biol 70: 1410-1424. (PDF)
  211. Willensdorfer M (2008). Organism size promotes the evolution of specialized cells in multicellular digital organisms. J Evol Biol 21: 104-110. (PDF)