Supplemental material

for

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites

Zhaohui S. Qin, Lee Ann McCue, William Thompson, Linda Mayerhofer,

Charles E. Lawrence, and Jun S. Liu

· Putative binding sites of E. coli and other gamma proteobacteria species, McCue, et al. 2001 and McCue, et al. 2002. Access the database here (data from Wadsworth Center, New York)

· Complete result on even palindromic motifs

· Complete result on odd palindromic motifs

· Supporting Text (PDF document)

· Table A2 Logo plots of clusters of even palindromic motifs from the E. coli phylogenetic footprints (Bayes ratio: 6-8)

· Table A3 Logo plots of clusters of odd palindromic motifs from the E. coli phylogenetic footprints (Bayes ratio: 6-8)

· Register for the BMC program (to receive update notice)here

· Download the BMC program (linux version) here (SUN Solaris version) here.

· This research was partly supported by the NSF Grants DMS-0094617 and DMS-0104129 to JSL, NIH Grant R01HG01257 to CEL, and DOE Grant DEFG0201ER63204 to CEL and LAM.