**************************************** * * * BioProspector Search Result * * * **************************************** Read input sequences. Look for motifs from the original sequences. Try #1 3.728 TTTCGACA TGTCGAAA 38 Try #2 3.460 AAAAGGAG CTCCTTTT 43 Try #3 3.324 AAAGGAGG CCTCCTTT 34 Try #4 3.215 AAAAATAG CTATTTTT 48 Try #5 3.670 AGGAGGTA TACCTCCT 56 Try #6 3.132 AAAAAAGA TCTTTTTT 44 Try #7 3.644 AAGGAGGT ACCTCCTT 35 Try #8 3.401 TCCCCCCT AGGGGGGA 39 Try #9 3.253 AAAGGATA TATCCTTT 52 Try #10 3.011 CTTTTTTT AAAAAAAG 47 Try #11 3.418 AAAGGAGG CCTCCTTT 40 Try #12 3.350 AAGGGAGG CCTCCCTT 38 Try #13 3.800 TTTGTCGA TCGACAAA 40 Try #14 3.795 TGTCGAAA TTTCGACA 39 Try #15 3.370 CGGCATTT AAATGCCG 41 Try #16 3.694 TCGACAAA TTTGTCGA 41 Try #17 3.588 TGTCGAAT ATTCGACA 45 Try #18 3.175 AATAATAT ATATTATT 47 Try #19 3.229 CTATCTGC GCAGATAG 33 Try #20 3.144 CTTTTTGT ACAAAAAG 34 Try #21 3.712 TTTTGTCG CGACAAAA 40 Try #22 3.321 AAAGGAGA TCTCCTTT 48 Try #23 3.348 GGAGGTTT AAACCTCC 37 Try #24 3.383 GAAGGAGG CCTCCTTC 44 Try #25 3.004 CTTGTTTT AAAACAAG 39 Try #26 3.455 AACCTCCT AGGAGGTT 39 Try #27 3.789 ATTCGACA TGTCGAAT 42 Try #28 3.050 ATAAAAGG CCTTTTAT 47 Try #29 3.417 AAGGAGGA TCCTCCTT 48 Try #30 3.561 ACCTCCTT AAGGAGGT 44 Try #31 3.209 AAAGGGGA TCCCCTTT 52 Try #32 3.669 AGGAGGTA TACCTCCT 42 Try #33 3.778 TTGTCGAA TTCGACAA 48 Try #34 3.258 CTATTTGT ACAAATAG 32 Try #35 3.255 TTATTGTA TACAATAA 32 Try #36 3.596 ATAGGAGG CCTCCTAT 40 Try #37 3.771 TCGACAAA TTTGTCGA 43 Try #38 3.187 ATAGAATA TATTCTAT 29 Try #39 3.370 AAATGTCG CGACATTT 52 Try #40 3.478 CCTCCTTT AAAGGAGG 42 Try #41 3.299 AATAGTAT ATACTATT 31 Try #42 3.153 ATAGTAAA TTTACTAT 42 Try #43 3.473 AAGGAGGA TCCTCCTT 44 Try #44 3.202 TATAATAA TTATTATA 37 Try #45 3.589 AAAGGAGG CCTCCTTT 43 Try #46 3.452 GGAGGGAT ATCCCTCC 39 Try #47 3.391 GAGGGGGA TCCCCCTC 49 Try #48 3.200 TAATAAAA TTTTATTA 43 Try #49 3.244 CCTCCTTT AAAGGAGG 34 Try #50 3.050 AGAAAAAG CTTTTTCT 45 Try #51 3.575 AGGAGGTA TACCTCCT 56 Try #52 3.305 ATTGTCGG CCGACAAT 33 Try #53 3.382 AAAAGGAG CTCCTTTT 37 Try #54 3.624 TAGGAGGT ACCTCCTA 38 Try #55 3.342 TTATTGTA TACAATAA 50 Try #56 3.245 TGAGAGGA TCCTCTCA 30 Try #57 3.487 ATTTGTCG CGACAAAT 34 Try #58 3.636 AGGAGGTT AACCTCCT 48 Try #59 3.182 GATGAAGA TCTTCATC 48 Try #60 3.753 TTTGTCGA TCGACAAA 41 Try #61 3.813 TTTGTCGA TCGACAAA 48 Try #62 3.350 TGACAAAA TTTTGTCA 45 Try #63 3.097 TTTTTTGT ACAAAAAA 34 Try #64 3.887 TTCGACAA TTGTCGAA 38 Try #65 3.496 AAAGGAGG CCTCCTTT 52 Try #66 3.172 ATAAAAAA TTTTTTAT 54 Try #67 3.168 TATTATAA TTATAATA 34 Try #68 3.433 AGAAGGAG CTCCTTCT 40 Try #69 3.768 TTTGTCGA TCGACAAA 40 Try #70 3.298 GATATAAT ATTATATC 46 Try #71 3.468 AGGAGGTG CACCTCCT 50 Try #72 3.606 ATAGGAGG CCTCCTAT 52 Try #73 3.488 GAAGGAGG CCTCCTTC 41 Try #74 3.285 TACAATAA TTATTGTA 37 Try #75 3.692 AGGAGGTT AACCTCCT 44 Try #76 3.243 ATAAATGA TCATTTAT 54 Try #77 3.622 AGGAGGTT AACCTCCT 44 Try #78 3.831 TTGTCGAA TTCGACAA 53 Try #79 3.407 TCTCCCTT AAGGGAGA 36 Try #80 3.184 AGGTGGAT ATCCACCT 41 Try #81 3.260 AAAGCTGA TCAGCTTT 33 Try #82 3.196 TTAAGGGG CCCCTTAA 33 Try #83 3.812 TTTCGACA TGTCGAAA 44 Try #84 3.415 AAAGGAGG CCTCCTTT 39 Try #85 3.534 GGAGGTAT ATACCTCC 45 Try #86 3.276 TTATTGTA TACAATAA 41 Try #87 3.578 AAGGAGGT ACCTCCTT 43 Try #88 3.498 AACCTCCT AGGAGGTT 54 Try #89 3.346 CCTCCATT AATGGAGG 44 Try #90 3.386 AATTGTAG CTACAATT 50 Try #91 3.231 ATAGAAAA TTTTCTAT 53 Try #92 3.732 TTTTGTCG CGACAAAA 42 Try #93 3.563 AAAGGAGG CCTCCTTT 41 Try #94 3.860 TTCGACAA TTGTCGAA 42 Try #95 3.260 TACAATAA TTATTGTA 41 Try #96 3.109 TTTATTAT ATAATAAA 45 Try #97 3.468 AAAGGAGG CCTCCTTT 41 Try #98 3.843 TTTGTCGA TCGACAAA 42 Try #99 3.302 TGACAAAA TTTTGTCA 38 Try #100 3.552 AAAGGAGG CCTCCTTT 42 Try #101 3.226 GTGAGGAT ATCCTCAC 46 Try #102 3.751 TTTGTCGA TCGACAAA 37 Try #103 3.656 AAGGAGGT ACCTCCTT 38 Try #104 3.133 AACATTTA TAAATGTT 32 Try #105 3.265 AAGGGGAA TTCCCCTT 32 Try #106 3.220 AAGAGGGA TCCCTCTT 45 Try #107 3.835 TTCGACAA TTGTCGAA 50 Try #108 3.113 AAAATAAA TTTATTTT 30 Try #109 3.573 AAGGAGGA TCCTCCTT 50 Try #110 3.791 TGTCGAAA TTTCGACA 44 Try #111 3.598 AGGAGGTT AACCTCCT 46 Try #112 3.598 AGGAGGTT AACCTCCT 45 Try #113 3.256 CTCCTTCT AGAAGGAG 35 Try #114 3.799 TTTGTCGA TCGACAAA 41 Try #115 3.478 AAAGGAGG CCTCCTTT 40 Try #116 3.649 AAGGAGGT ACCTCCTT 40 Try #117 3.608 AGGAGGTA TACCTCCT 48 Try #118 3.791 TTTGTCGA TCGACAAA 43 Try #119 3.447 AGAAGGAG CTCCTTCT 45 Try #120 3.729 TCGACAAA TTTGTCGA 35 Try #121 3.497 AGGAGGTT AACCTCCT 42 Try #122 3.804 TTTGTCGA TCGACAAA 50 Try #123 3.239 CTATCTAT ATAGATAG 49 Try #124 3.314 TATAATAA TTATTATA 45 Try #125 3.709 TTTGTCGA TCGACAAA 34 Try #126 3.659 AAGGAGGT ACCTCCTT 42 Try #127 3.208 AAAAAGTA TACTTTTT 37 Try #128 3.687 TTTTGTCG CGACAAAA 35 Try #129 3.417 AGGAGGTT AACCTCCT 40 Try #130 3.565 AGAGGAGG CCTCCTCT 35 Try #131 3.656 AAGGAGGT ACCTCCTT 38 Try #132 3.813 TTCGACAA TTGTCGAA 54 Try #133 3.792 TGTCGAAA TTTCGACA 39 Try #134 3.239 AGAATAAA TTTATTCT 35 Try #135 3.824 TTTCGACA TGTCGAAA 50 Try #136 3.221 TCAGCTTT AAAGCTGA 26 Try #137 3.237 AAAGGGGA TCCCCTTT 41 Try #138 3.259 CGTTTACA TGTAAACG 29 Try #139 3.687 AAGGAGGT ACCTCCTT 43 Try #140 3.075 AAAACAAA TTTGTTTT 36 Try #141 3.859 TTGTCGAA TTCGACAA 37 Try #142 3.354 GAAGGAAA TTTCCTTC 29 Try #143 3.177 ATACTATC GATAGTAT 32 Try #144 3.168 AAAAAAAG CTTTTTTT 61 Try #145 3.511 TAGGAGGT ACCTCCTA 36 Try #146 3.420 AGGAGGTA TACCTCCT 31 Try #147 3.177 ACTATTAT ATAATAGT 43 Try #148 3.484 AGGAGGTA TACCTCCT 47 Try #149 3.520 AAAGGAGG CCTCCTTT 48 Try #150 3.264 TTTCATCA TGATGAAA 34 Try #151 3.665 TCGACAAA TTTGTCGA 41 Try #152 3.044 TCTTTTTT AAAAAAGA 51 Try #153 3.677 TGTCGAAA TTTCGACA 51 Try #154 3.815 TGTCGAAT ATTCGACA 43 Try #155 3.649 AAGGAGGT ACCTCCTT 41 Try #156 3.474 AGGAGGTT AACCTCCT 33 Try #157 3.306 TTATTGTA TACAATAA 44 Try #158 3.283 CGACAATT AATTGTCG 42 Try #159 3.642 AAAGGAGG CCTCCTTT 38 Try #160 3.818 TTGTCGAA TTCGACAA 53 Try #161 3.143 AGTATATC GATATACT 44 Try #162 3.202 AGAAAAAG CTTTTTCT 30 Try #163 3.794 TGTCGAAA TTTCGACA 39 Try #164 3.346 TACAATAA TTATTGTA 47 Try #165 3.407 AAGGAGGT ACCTCCTT 32 Try #166 3.143 GAAAAAGA TCTTTTTC 35 Try #167 3.611 ACCTCCTT AAGGAGGT 45 Try #168 3.770 TTCGACAA TTGTCGAA 43 Try #169 3.873 TTGTCGAA TTCGACAA 32 Try #170 3.205 TTATTGTA TACAATAA 31 Try #171 3.213 AAATAGTA TACTATTT 34 Try #172 3.577 TGTCAAAT ATTTGACA 45 Try #173 3.238 AATTGTCG CGACAATT 50 Try #174 3.264 TACAAAAA TTTTTGTA 49 Try #175 3.150 AGCAAATG CATTTGCT 27 Try #176 3.388 CCTCCTAA TTAGGAGG 30 Try #177 3.175 TTATTTAT ATAAATAA 42 Try #178 3.358 TAGGAGGT ACCTCCTA 52 Try #179 3.481 GGAGGTAT ATACCTCC 47 Try #180 3.340 TAGGAGGT ACCTCCTA 33 Try #181 3.542 CCCTCCTT AAGGAGGG 42 Try #182 3.675 AGGAGGTT AACCTCCT 45 Try #183 3.636 TTGTCGAA TTCGACAA 39 Try #184 3.349 TTAGATGG CCATCTAA 44 Try #185 3.868 TTCGACAA TTGTCGAA 51 Try #186 3.840 TTTGTCGA TCGACAAA 45 Try #187 3.042 AAATAATA TATTATTT 34 Try #188 3.783 TTGTCGAA TTCGACAA 55 Try #189 3.318 AAAGGAGG CCTCCTTT 35 Try #190 3.658 AAGGAGGT ACCTCCTT 41 Try #191 3.716 TTTCGACA TGTCGAAA 53 Try #192 3.754 GTCGAAAA TTTTCGAC 41 Try #193 3.257 CAAATGGA TCCATTTG 28 Try #194 3.452 CACCTCCT AGGAGGTG 53 Try #195 3.700 AGGAGGTT AACCTCCT 49 Try #196 3.653 AGGAGGTA TACCTCCT 41 Try #197 3.625 ACCTCCTT AAGGAGGT 37 Try #198 3.625 AACCTCCT AGGAGGTT 42 Try #199 3.608 ACCTCCTT AAGGAGGT 39 Try #200 3.660 AGGAGGTA TACCTCCT 56 The highest scoring 5 motifs are: Motif #1: (TTCGACAA/TTGTCGAA) ****************************** Width (8, 0); Gap [0, 0]; MotifScore 3.887; Segments 38 Blk1 A C G T Con rCon Deg rDeg 1 0.00 0.11 0.00 0.89 T A T A 2 0.00 0.05 0.00 0.95 T A T A 3 0.00 0.79 0.00 0.21 C G C G 4 0.00 0.00 1.00 0.00 G C G C 5 0.95 0.00 0.00 0.05 A T A T 6 0.00 1.00 0.00 0.00 C G C G 7 1.00 0.00 0.00 0.00 A T A T 8 0.81 0.00 0.00 0.18 A T A T >spoIIGA 1603076 1604002 + seg 1 f63 -138 CTCGACAA >spoIIE 70536 73016 + seg 1 f130 -71 TTTGACAA >kinA 1469330 1471147 + seg 1 r30 -30 TTCGACAT >spo0F 3808576 3808947 - seg 1 r23 -23 TTCGTCAA >dltA 3951296 3952804 + seg 1 r191 -191 TTCGACAA >rapA 1315179 1316312 + seg 1 f111 -90 TTCGACAA >kinC 1517640 1518923 + seg 1 r44 -44 TTCGACAA >abrB 44849 45136 - seg 1 r53 -53 TTCGACAA >spo0A 2517260 2518060 - seg 1 r55 -55 TTCGACAA >spo0A 2517260 2518060 - seg 2 f10 -191 TTCGACAA >spo0A 2517260 2518060 - seg 3 r160 -160 TTTGACAA >sinI 2551678 2551848 + seg 1 f30 -171 TTCGACAT >yppD 2338426 2338668 - seg 1 r126 -126 TTCGACAA >ybcO 213926 214090 + seg 1 f117 -84 TTCGACAA >yttP 3031463 3032083 - seg 1 f60 -141 TTCGACAT >yocH 2092113 2092973 - seg 1 f130 -71 TTTGACAT >yneE 1921226 1921669 + seg 1 f94 -107 TCCGACAA >accD 2987735 2988520 - seg 1 f16 -185 TTTGACAA >ykuL 1484759 1485199 + seg 1 f122 -79 TTCGACAA >dnaA 410 1747 + seg 1 r134 -134 TTCGACAA >ylmD 1608624 1609457 + seg 1 r14 -14 TTCGACAA >yvyE 3645783 3646433 + seg 1 r147 -147 TTCGACAT >ywcH 3909328 3910326 - seg 1 f77 -124 TCCGACAA >fruR 1506885 1507637 + seg 1 r163 -163 TTCGACAA >ykaA 1349796 1350410 - seg 1 f136 -65 TTCGACAA >flgB 1690578 1690964 + seg 1 f151 -50 CTCGACAA >ftsE 3623854 3624537 - seg 1 r60 -60 TTCGACAA >ftsE 3623854 3624537 - seg 2 f12 -189 CTTGACAA >yqzD 2575599 2575949 + seg 1 f104 -97 CTCGACAA >med 1205937 1206887 + seg 1 f96 -105 TTCGACAA >med 1205937 1206887 + seg 2 r17 -17 TTTGACAA >yuxH 3257084 3258310 - seg 1 f138 -63 TTCGTCAA >veg 52761 53018 + seg 1 r101 -101 TTTGACAA >yjcP 1265926 1266426 + seg 1 f129 -72 TTCGACAA >ykzF 1484424 1484618 + seg 1 r103 -103 TTCGACAT >yppF 2337779 2337964 + seg 1 r93 -93 TTTGACAA >yvyD 3630036 3630602 - seg 1 f93 -108 TTCGACAA >ywqC 3731555 3732298 - seg 1 r89 -89 TTCGACAT ****************************** Motif #2: (TTGTCGAA/TTCGACAA) ****************************** Width (8, 0); Gap [0, 0]; MotifScore 3.873; Segments 32 Blk1 A C G T Con rCon Deg rDeg 1 0.22 0.00 0.00 0.78 T A T A 2 0.00 0.00 0.00 1.00 T A T A 3 0.00 0.00 1.00 0.00 G C G C 4 0.00 0.00 0.00 1.00 T A T A 5 0.00 1.00 0.00 0.00 C G C G 6 0.00 0.00 0.87 0.13 G C G C 7 0.94 0.00 0.06 0.00 A T A T 8 0.90 0.00 0.09 0.00 A T A T >spoIIGA 1603076 1604002 + seg 1 r131 -131 TTGTCGAG >spoIIE 70536 73016 + seg 1 r147 -147 TTGTCTAA >kinA 1469330 1471147 + seg 1 f164 -37 ATGTCGAA >dltA 3951296 3952804 + seg 1 f3 -198 TTGTCGAA >rapA 1315179 1316312 + seg 1 r83 -83 TTGTCGAA >kinC 1517640 1518923 + seg 1 f150 -51 TTGTCGAA >abrB 44849 45136 - seg 1 f141 -60 TTGTCGAA >spo0A 2517260 2518060 - seg 1 r184 -184 TTGTCGAA >spo0A 2517260 2518060 - seg 2 f139 -62 TTGTCGAA >sinI 2551678 2551848 + seg 1 r164 -164 ATGTCGAA >yppD 2338426 2338668 - seg 1 f68 -133 TTGTCGAA >ybcO 213926 214090 + seg 1 r77 -77 TTGTCGAA >yttP 3031463 3032083 - seg 1 r134 -134 ATGTCGAA >ywkC 3797812 3798363 + seg 1 f136 -65 TTGTCTAA >yneE 1921226 1921669 + seg 1 r100 -100 TTGTCGGA >ykuL 1484759 1485199 + seg 1 r72 -72 TTGTCGAA >dnaA 410 1747 + seg 1 f60 -141 TTGTCGAA >ylmD 1608624 1609457 + seg 1 f180 -21 TTGTCGAA >yvyE 3645783 3646433 + seg 1 f47 -154 ATGTCGAA >ywcH 3909328 3910326 - seg 1 r117 -117 TTGTCGGA >fruR 1506885 1507637 + seg 1 f31 -170 TTGTCGAA >ykaA 1349796 1350410 - seg 1 r58 -58 TTGTCGAA >flgB 1690578 1690964 + seg 1 r43 -43 TTGTCGAG >ftsE 3623854 3624537 - seg 1 f134 -67 TTGTCGAA >ftsE 3623854 3624537 - seg 2 f49 -152 ATGTCTAA >yqzD 2575599 2575949 + seg 1 r90 -90 TTGTCGAG >med 1205937 1206887 + seg 1 r98 -98 TTGTCGAA >yuxH 3257084 3258310 - seg 1 r66 -66 TTGTCTAA >yjcP 1265926 1266426 + seg 1 r65 -65 TTGTCGAA >ykzF 1484424 1484618 + seg 1 f91 -110 ATGTCGAA >yvyD 3630036 3630602 - seg 1 r101 -101 TTGTCGAA >ywqC 3731555 3732298 - seg 1 f105 -96 ATGTCGAA ****************************** Motif #3: (TTCGACAA/TTGTCGAA) ****************************** Width (8, 0); Gap [0, 0]; MotifScore 3.868; Segments 51 Blk1 A C G T Con rCon Deg rDeg 1 0.00 0.10 0.00 0.90 T A T A 2 0.12 0.06 0.00 0.82 T A T A 3 0.00 0.76 0.00 0.24 C G C G 4 0.00 0.00 1.00 0.00 G C G C 5 0.90 0.00 0.10 0.00 A T A T 6 0.00 1.00 0.00 0.00 C G C G 7 1.00 0.00 0.00 0.00 A T A T 8 0.69 0.02 0.06 0.24 A T A T >spoIIGA 1603076 1604002 + seg 1 f63 -138 CTCGACAA >spoIIE 70536 73016 + seg 1 f130 -71 TTTGACAA >sigE 1604068 1604784 + seg 1 r75 -75 TTTGACAG >spoIIAA 2443837 2444187 - seg 1 r86 -86 TTCGGCAT >kinA 1469330 1471147 + seg 1 r30 -30 TTCGACAT >spo0F 3808576 3808947 - seg 1 r96 -96 TACGACAT >dltA 3951296 3952804 + seg 1 r191 -191 TTCGACAA >rapA 1315179 1316312 + seg 1 f111 -90 TTCGACAA >kinC 1517640 1518923 + seg 1 r44 -44 TTCGACAA >abrB 44849 45136 - seg 1 r53 -53 TTCGACAA >spo0A 2517260 2518060 - seg 1 r55 -55 TTCGACAA >spo0A 2517260 2518060 - seg 2 f10 -191 TTCGACAA >spo0A 2517260 2518060 - seg 3 r160 -160 TTTGACAA >sinI 2551678 2551848 + seg 1 f30 -171 TTCGACAT >yppD 2338426 2338668 - seg 1 r126 -126 TTCGACAA >ybcO 213926 214090 + seg 1 f117 -84 TTCGACAA >yttP 3031463 3032083 - seg 1 f60 -141 TTCGACAT >ywkC 3797812 3798363 + seg 1 r78 -78 TTCGGCAA >yocH 2092113 2092973 - seg 1 f130 -71 TTTGACAT >yneE 1921226 1921669 + seg 1 f94 -107 TCCGACAA >ycgM 344111 345019 + seg 1 f40 -161 TTCGACAG >accD 2987735 2988520 - seg 1 f16 -185 TTTGACAA >ykuL 1484759 1485199 + seg 1 f122 -79 TTCGACAA >dnaG 2600764 2602572 - seg 1 r56 -56 TTCGACAG >dnaA 410 1747 + seg 1 r134 -134 TTCGACAA >metS 45631 47622 + seg 1 f173 -28 TTTGACAT >ylmD 1608624 1609457 + seg 1 r14 -14 TTCGACAA >relA 2819758 2821959 - seg 1 f4 -197 TACGACAT >yvyE 3645783 3646433 + seg 1 r147 -147 TTCGACAT >yvyE 3645783 3646433 + seg 2 r189 -189 TATGACAA >ywcH 3909328 3910326 - seg 1 f77 -124 TCCGACAA >fruR 1506885 1507637 + seg 1 r163 -163 TTCGACAA >fruR 1506885 1507637 + seg 2 r186 -186 TACGACAT >tkt 1919070 1921070 + seg 1 f44 -157 TACGGCAA >ykaA 1349796 1350410 - seg 1 f136 -65 TTCGACAA >flgB 1690578 1690964 + seg 1 f151 -50 CTCGACAA >ftsE 3623854 3624537 - seg 1 r60 -60 TTCGACAA >ftsE 3623854 3624537 - seg 2 f12 -189 CTTGACAA >yrrL 2795117 2796196 - seg 1 r45 -45 TTCGGCAA >yqzD 2575599 2575949 + seg 1 f104 -97 CTCGACAA >purE 697954 698439 + seg 1 r165 -165 TCCGGCAA >med 1205937 1206887 + seg 1 f96 -105 TTCGACAA >med 1205937 1206887 + seg 2 r17 -17 TTTGACAA >yrdB 2733001 2733369 - seg 1 r193 -193 TATGACAA >veg 52761 53018 + seg 1 f150 -51 TTTGACAA >yjcP 1265926 1266426 + seg 1 f129 -72 TTCGACAA >ykzF 1484424 1484618 + seg 1 r103 -103 TTCGACAT >yppF 2337779 2337964 + seg 1 r93 -93 TTTGACAA >yvyD 3630036 3630602 - seg 1 f93 -108 TTCGACAA >nfrA 3910503 3911249 - seg 1 f5 -196 CTCGACAC >ywqC 3731555 3732298 - seg 1 r89 -89 TTCGACAT ****************************** Motif #4: (TTCGACAA/TTGTCGAA) ****************************** Width (8, 0); Gap [0, 0]; MotifScore 3.860; Segments 42 Blk1 A C G T Con rCon Deg rDeg 1 0.00 0.00 0.00 1.00 T A T A 2 0.02 0.00 0.00 0.98 T A T A 3 0.00 0.78 0.00 0.21 C G C G 4 0.00 0.00 1.00 0.00 G C G C 5 0.81 0.05 0.00 0.14 A T A T 6 0.00 1.00 0.00 0.00 C G C G 7 1.00 0.00 0.00 0.00 A T A T 8 0.62 0.00 0.12 0.26 A T W W >spoIIE 70536 73016 + seg 1 f130 -71 TTTGACAA >sigE 1604068 1604784 + seg 1 r75 -75 TTTGACAG >kinA 1469330 1471147 + seg 1 r30 -30 TTCGACAT >spo0F 3808576 3808947 - seg 1 r23 -23 TTCGTCAA >dltA 3951296 3952804 + seg 1 r191 -191 TTCGACAA >rapA 1315179 1316312 + seg 1 f111 -90 TTCGACAA >kinC 1517640 1518923 + seg 1 r44 -44 TTCGACAA >abrB 44849 45136 - seg 1 r53 -53 TTCGACAA >abrB 44849 45136 - seg 2 r43 -43 TTCGTCAT >spo0A 2517260 2518060 - seg 1 r55 -55 TTCGACAA >spo0A 2517260 2518060 - seg 2 f10 -191 TTCGACAA >spo0A 2517260 2518060 - seg 3 r160 -160 TTTGACAA >sinI 2551678 2551848 + seg 1 f30 -171 TTCGACAT >yppD 2338426 2338668 - seg 1 r126 -126 TTCGACAA >ybcO 213926 214090 + seg 1 f117 -84 TTCGACAA >yttP 3031463 3032083 - seg 1 f60 -141 TTCGACAT >yocH 2092113 2092973 - seg 1 f130 -71 TTTGACAT >ycgM 344111 345019 + seg 1 f40 -161 TTCGACAG >accD 2987735 2988520 - seg 1 f16 -185 TTTGACAA >ykuL 1484759 1485199 + seg 1 f122 -79 TTCGACAA >dnaG 2600764 2602572 - seg 1 r56 -56 TTCGACAG >dnaA 410 1747 + seg 1 r134 -134 TTCGACAA >holB 40663 41649 + seg 1 r45 -45 TTCGCCAA >ylmD 1608624 1609457 + seg 1 r14 -14 TTCGACAA >relA 2819758 2821959 - seg 1 f4 -197 TACGACAT >yvyE 3645783 3646433 + seg 1 r147 -147 TTCGACAT >ywcH 3909328 3910326 - seg 1 r85 -85 TTCGCCAT >fruR 1506885 1507637 + seg 1 r163 -163 TTCGACAA >ykaA 1349796 1350410 - seg 1 f136 -65 TTCGACAA >ftsE 3623854 3624537 - seg 1 r60 -60 TTCGACAA >yrrL 2795117 2796196 - seg 1 r191 -191 TTCGTCAG >med 1205937 1206887 + seg 1 f96 -105 TTCGACAA >med 1205937 1206887 + seg 2 r17 -17 TTTGACAA >yuxH 3257084 3258310 - seg 1 f138 -63 TTCGTCAA >sigV 2769077 2769574 + seg 1 f8 -193 TTTGTCAT >veg 52761 53018 + seg 1 r101 -101 TTTGACAA >yjcP 1265926 1266426 + seg 1 f129 -72 TTCGACAA >ykzF 1484424 1484618 + seg 1 r103 -103 TTCGACAT >yppF 2337779 2337964 + seg 1 r93 -93 TTTGACAA >yvyD 3630036 3630602 - seg 1 f93 -108 TTCGACAA >nfrA 3910503 3911249 - seg 1 r134 -134 TTCGTCAG >ywqC 3731555 3732298 - seg 1 r89 -89 TTCGACAT ****************************** Motif #5: (TTGTCGAA/TTCGACAA) ****************************** Width (8, 0); Gap [0, 0]; MotifScore 3.859; Segments 37 Blk1 A C G T Con rCon Deg rDeg 1 0.19 0.00 0.00 0.81 T A T A 2 0.00 0.00 0.00 1.00 T A T A 3 0.00 0.00 1.00 0.00 G C G C 4 0.00 0.00 0.00 1.00 T A T A 5 0.00 1.00 0.00 0.00 C G C G 6 0.14 0.00 0.76 0.11 G C G C 7 0.94 0.00 0.05 0.00 A T A T 8 0.92 0.00 0.08 0.00 A T A T >spoIIGA 1603076 1604002 + seg 1 r131 -131 TTGTCGAG >spoIIE 70536 73016 + seg 1 r147 -147 TTGTCTAA >kinA 1469330 1471147 + seg 1 f164 -37 ATGTCGAA >dltA 3951296 3952804 + seg 1 f3 -198 TTGTCGAA >rapA 1315179 1316312 + seg 1 r83 -83 TTGTCGAA >kinC 1517640 1518923 + seg 1 f150 -51 TTGTCGAA >abrB 44849 45136 - seg 1 f141 -60 TTGTCGAA >spo0A 2517260 2518060 - seg 1 r184 -184 TTGTCGAA >spo0A 2517260 2518060 - seg 2 f139 -62 TTGTCGAA >spo0A 2517260 2518060 - seg 3 f34 -167 TTGTCAAA >sinI 2551678 2551848 + seg 1 r164 -164 ATGTCGAA >yppD 2338426 2338668 - seg 1 f68 -133 TTGTCGAA >ybcO 213926 214090 + seg 1 r77 -77 TTGTCGAA >yttP 3031463 3032083 - seg 1 r134 -134 ATGTCGAA >ywkC 3797812 3798363 + seg 1 f136 -65 TTGTCTAA >yneE 1921226 1921669 + seg 1 r100 -100 TTGTCGGA >accD 2987735 2988520 - seg 1 r178 -178 TTGTCAAA >ykuL 1484759 1485199 + seg 1 r72 -72 TTGTCGAA >dnaA 410 1747 + seg 1 f60 -141 TTGTCGAA >ylmD 1608624 1609457 + seg 1 f180 -21 TTGTCGAA >yvyE 3645783 3646433 + seg 1 f47 -154 ATGTCGAA >ywcH 3909328 3910326 - seg 1 r117 -117 TTGTCGGA >fruR 1506885 1507637 + seg 1 f31 -170 TTGTCGAA >ykaA 1349796 1350410 - seg 1 r58 -58 TTGTCGAA >flgB 1690578 1690964 + seg 1 r43 -43 TTGTCGAG >ftsE 3623854 3624537 - seg 1 f134 -67 TTGTCGAA >ftsE 3623854 3624537 - seg 2 f49 -152 ATGTCTAA >yqzD 2575599 2575949 + seg 1 r90 -90 TTGTCGAG >med 1205937 1206887 + seg 1 r98 -98 TTGTCGAA >med 1205937 1206887 + seg 2 f177 -24 TTGTCAAA >yuxH 3257084 3258310 - seg 1 r66 -66 TTGTCTAA >veg 52761 53018 + seg 1 r44 -44 TTGTCAAA >yjcP 1265926 1266426 + seg 1 r65 -65 TTGTCGAA >ykzF 1484424 1484618 + seg 1 f91 -110 ATGTCGAA >yppF 2337779 2337964 + seg 1 f101 -100 TTGTCAAA >yvyD 3630036 3630602 - seg 1 r101 -101 TTGTCGAA >ywqC 3731555 3732298 - seg 1 f105 -96 ATGTCGAA ****************************** Total time 0:1:33.