Evolution and Theology of Cooperation

Background Reading


Publications from ETC

2005

  • Coakley S (2005). Sarah Coakley: Fresh paths in systematic theology. In R Shortt ed., God's Advocates: Christian Thinkers in Conversation. London: D.L.T., 67-85.

  • Coakley S (2005). Pleasure principles: toward a theology of desire. Harvard Divinity Bulletin (Autumn) 20-33.

  • Imhof LA, D Fudenberg, MA Nowak (2005). Evolutionary cycles of cooperation and defection. Proc Natl Acad Sci USA 102: 10797-10800. PDF

  • Iwasa Y, F Michor, NL Komarova, MA Nowak (2005). Population genetics of tumor suppressor genes. J theor Biol 233: 15-23. PDF

  • Iwasa Y, F Michor, MA Nowak (2005). Virus evolution within patients increases pathogenicity. J theor Biol 232: 17-26. PDF

  • Lieberman E, C Hauert, MA Nowak (2005). Evolutionary dynamics on graphs. Nature 433: 312-316. PDF

  • Michor F, TP Hughes, Y Iwasa, S Branford, NP Shah, CL Sawyers, MA Nowak (2005). Dynamics of chronic myeloid leukaemia. Nature 435: 1267-1270. PDF

  • Michor F, Y Iwasa, C Lengauer, MA Nowak (2005). Dynamics of colorectal cancer. Semin Cancer Biol 15: 484-493. PDF

  • Michor F, Y Iwasa, B Vogelstein, C Lengauer, MA Nowak (2005). Can chromosomal instability initiate tumorigenesis? Semin Cancer Biol 15: 43-45. PDF

  • Nowak MA, NL Komarova (2005). The evolution of altruism: from game theory to human language. In C Harper, ed., Spiritual Information. Templeton Foundation Press, 308-314.

  • Nowak MA, K Sigmund (2005). Evolution of indirect reciprocity. Nature 437: 1291-1298. PDF

  • Traulsen A, JC Claussen, C Hauert (2005). Coevolutionary dynamics: From finite to infinite populations. Phys Rev Lett 95: 238701. PDF

  • Traulsen A, A Sengupta, MA Nowak (2005). Stochastic evolutionary dynamics on two levels. J theor Biol 235: 393-401. PDF

  • Willensdorfer M, MA Nowak (2005). Mutation in evolutionary games can increase average fitness at equilibrium. J theor Biol 237: 355-362. PDF

2006

  • Brandt H, C Hauert, K Sigmund (2006). Punishing and abstaining for public goods. Proc Natl Acad Sci USA 103: 495-497. PDF

  • Bürger R, M Willensdorfer, MA Nowak (2006). Why are phenotypic mutation rates much higher than genotypic mutation rates? Genetics 172: 197-206. PDF

  • Clayton P (2006). Biology, directionality, and God: getting clear on the stakes for religion-science discussion. Theology and Science 4/2: 121-127.

  • Clayton P (2006). The Oxford Handbook of Religion and Science. Oxford: Oxford University Press.

  • Clayton P (2006). Author's response to symposium on Clayton, Mind and Emergence. Emergence from physics to theology: Toward a panoramic view. Zygon 41/3: 675-687.

  • Clayton P (2006). Global perspectives, local applications: a vision for the method and impact of science-spirituality studies. Omega: Indian Journal of Science and Religion 5/2: 7-24.

  • Clayton P (2006). Religion and the social sciences: reflections on the human quest for meaning. In L Schulz ed., The Evolution of Rationality, Festschrift for J. Wentzel van Huyssteen. Grand Rapids, MI: Eerdmans, 86-105.

  • Clayton P (2006). 'Creative mutual interaction' as manifesto, research program, and regulative ideal. In T Peters, N Hallanger eds., God's Action in Nature's World: Essays in Honour of Robert John Russell Aldershot, UK: Ashgate Publishing.

  • Clayton P (2006). Foreword. In J Staune ed., Science and the Search for Meaning: Perspectives from International Scientists Philadelphia: Templeton Foundation Press, vii-xvii.

  • Clayton P (2006). The state of the international religion-science discussion today. Islam and Science 2/1 (Summer 2004), republished in F Watts, K Dutton eds., Why Science and Religion Matters: Perspectives from World Religions. Philadelphia: Templeton Foundation Press, 63-71.

  • Clayton P, P Davies, eds. (2006). The Re-emergence of Emergence: The Emergentist Hypothesis from Science to Religion. Oxford: Oxford University Press.

  • Clayton P, S Kauffman (2006). On emergence, agency, and organization. Philosophy and Biology 21:501-521.

  • Coakley S (2006). Theological scholarship as religious vocation. Christian Higher Education 5: 55-68.

  • Coakley S (2006). The Trinity and gender reconsidered. In M Volf, M Welker, eds., God's Life in Trinity (a Festschrift for J Moltmann). Minneapolis: Fortress, 133-142.

  • Coakley S (2006). 'In persona Christi': gender, priesthood and the nuptial metaphor. Svensk Teologisk Kvartalskrift 82: 145-154.

  • Coakley S (2006). Beyond libertarianism and repression: the quest for an Anglican theological ascetics. In T Brown ed., Other Voices, Other Worlds. London: D.L.T., 331-338.

  • Coakley S (2006). Does kenosis rest on a mistake? Three kenotic models in patristic exegesis. In CS Evans, ed. Exploring Kenotic Christology: The Self-Emptying God. Oxford: Oxford University Press, 246-264.

  • Curtis H (2006). Houses of healing: sacred space, spiritual practice and the transformation of female suffering in the faith cure movement, 1870-1890. Church History (September) 598-611.

  • Curtis H (2006). 'Acting faith': divine healing as devotional practice in late-nineteenth century Protestantism. In L Maffly-Kipp, L Schmidt, M Valeri eds., Practicing Protestants: Histories of Christian Life in America. Baltimore: Johns Hopkins University Press, 137-158.

  • Dingli D, MA Nowak (2006). Infectious tumour cells. Nature 443: 35-36. PDF

  • Doebeli M, C Hauert (2006). The limits of Hamilton's Rule. J Evol Biol 19: 1386-1388. PDF

  • Foster K (2006). The phoenix effect. Nature 441: 291-292.

  • Hauert C, M Holmes, M Doebeli (2006). Evolutionary games and population dynamics: maintenance of cooperation in public goods games. Proc R Soc B 273: 2565-2570. PDF

  • Hauert C, F Michor, MA Nowak, M Doebeli (2006). Synergy and discounting of cooperation in social dilemmas. J theor Biol 239: 195-202. PDF

  • Imhof LA, MA Nowak (2006). Evolutionary game dynamics in a Wright-Fisher process. J Math Biol 52: 667-681. PDF

  • Iwasa Y, MA Nowak, F Michor (2006). Evolution of resistance during clonal expansion. Genetics 172: 2557-2566. PDF

  • Michor F, Y Iwasa, MA Nowak (2006). The age incidence of chronic myeloid leukemia can be explained by a one-mutation model. Proc Natl Acad Sci USA 103: 14931-14934. PDF

  • Michor F, MA Nowak, Y Iwasa (2006). Evolution of resistance to cancer therapy. Curr Pharm Design 12: 261-271. PDF

  • Michor F, MA Nowak, Y Iwasa (2006). Stochastic dynamics of metastasis formation. J theor Biol 240: 521-530. PDF

  • Nowak MA (2006). Five rules for the evolution of cooperation. Science 314: 1560-1563. PDF

  • Nowak MA (2006). Evolutionary Dynamics: Exploring the Equations of Life. Cambridge, MA: Harvard University Press.

  • Nowak MA, F Michor, Y Iwasa (2006). Genetic instability and clonal expansion. J theor Biol 241: 26-32. PDF

  • Ohtsuki H, C Hauert, E Lieberman, MA Nowak (2006). A simple rule for the evolution of cooperation on graphs and social networks. Nature 441: 502-505. PDF

  • Ohtsuki H, MA Nowak (2006). Evolutionary games on cycles. Proc R Soc B 273: 2249-2256. PDF

  • Ohtsuki H, MA Nowak (2006). The replicator equation on graphs. J theor Biol 243: 86-97. PDF

  • Pacheco JM, A Traulsen, MA Nowak (2006). Active linking in evolutionary games. J theor Biol 243: 437-443. PDF

  • Pacheco JM, A Traulsen, MA Nowak (2006). Coevolution of strategy and structure in complex networks with dynamical linking. Phys Rev Lett 97: 258103. PDF

  • Pfeiffer T, MA Nowak (2006). Climate change: All in the game. Nature 441: 583-584. PDF

  • Pfeiffer T, MA Nowak (2006). Digital cows grazing on digital grounds. Curr Biol 16: R946-R949. PDF

  • Taylor C, Y Iwasa, MA Nowak (2006). A symmetry of fixation times in evolutionary dynamics. J theor Biol 243: 245-251. PDF

  • Taylor C, MA Nowak (2006). Evolutionary game dynamics with non-uniform interaction rates. Theor Popul Biol 69: 243-252. PDF

  • Traulsen A, JC Claussen, C Hauert (2006). Coevolutionary dynamics in large but finite populations. Phys Rev E 74: 011901. PDF

  • Traulsen A, MA Nowak (2006). Evolution of cooperation by multilevel selection. Proc Natl Acad Sci USA 103: 10952-10955. PDF

  • Traulsen A, MA Nowak, J Pacheco (2006). Stochastic dynamics of invasion and fixation. Phys Rev E 74: 011909 PDF

2007

  • Beerenwinkel N, T Antal, D Dingli, A Traulsen, KW Kinzler, VE Velculescu, B Vogelstein, MA Nowak (2007). Genetic progression and the waiting time to cancer. PLoS Comput Biol 3: e225. PDF

  • Clayton P (2007). Hierarchies: The core argument for a naturalistic Christian faith. Zygon 43/1: 25-39.

  • Clayton P, ed. (2007). All That Is: A Naturalistic Faith for the 21st Century. Fortress Press.

  • Clayton P (2007). Toward a constructive Christian theology of emergence. In N Murphy and WR Stoeger, S.J. eds., Evolution and Emergence: Systems, Organisms, Persons. Oxford: Oxford University Press.

  • Clayton P (2007). Boundaries crossed and uncrossable: physical science, social science, theology. In K Vanhoozer, M Warner eds. Transcending Boundaries in Philosophy and Theology: Reason, Meaning and Experience . Aldershot: Ashgate, 91-103.

  • Clayton P, J Schaal, eds. (2007). Practicing Science, Living Faith: Twelve Scientists in the Quest for Reconciliation. New York: Columbia University Press.

  • Coakley S (2007). God and evolution: a new solution. Harvard Divinity Bulletin (Spring/Summer) 8-13.

  • Coakley S (2007). The God of Nicaea: disputed questions in patristic trinitarianism, edited with introduction. Harvard Theological Review (April).

  • Coakley S (2007). Twin passions: two scientists explore science and religion. Review of E.O. Wilson, The Creation (New York: W.W. Norton, 2006) and of Owen Gingerich, God's Universe (Cambridge, MA: Belknap/Harvard University Press, 2006). Harvard Magazine (June/July) 22-26.

  • Coakley S, K Kaufman Shelemay, eds. (2007). Pain and Its Transformations: The Interface of Biology and Culture. Cambridge, MA: Harvard University Press.

  • Curtis H (2007). Faith in the great physician: suffering and divine healing in American culture, 1860-1900. Baltimore: Johns Hopkins University Press.

  • Hauert C, A Traulsen, H Brandt, MA Nowak, K Sigmund (2007). Via freedom to coercion: the emergence of costly punishment. Science 316: 1905-1907. PDF (supplementary information)

  • Imhof L, D Fudenberg, MA Nowak (2007). Tit-for-tat or win-stay, lose-shift? J theor Biol 247: 574-580. PDF

  • Iwasa Y, F Michor, MA Nowak (2007). Directional evolution of virus within a host under immune selection. In Mathematics for Life Science and Medicine, eds.Y Takeuchi, Y Iwasa, K Sato. Springer: New York.

  • Lieberman E, JB Michel, J Jackson, T Tang, MA Nowak (2007). Quantifying the evolutionary dynamics of language. Nature 449: 713-716. PDF

  • Nowak MA, S Roch (2007). Upstream reciprocity and the evolution of gratitude. Proc R Soc B 274: 605-609. PDF

  • Nowak MA, K Sigmund (2007). How populations cohere: five rules for cooperation. In RM May, A McLean eds. Theoretical Ecology: Principles and Applications. Oxford: Oxford University Press, 7-16. PDF

  • Ohtsuki H, P Bordalo, MA Nowak (2007). The one third law of evolutionary dynamics. J theor Biol 249: 289-295. PDF

  • Ohtsuki H, MA Nowak (2007). Direct reciprocity on graphs. J theor Biol 247: 462-470. PDF

  • Ohtsuki H, J Pacheco, MA Nowak (2007). Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs. Phys Rev Lett 98: 108106. PDF

  • Ohtsuki H, J Pacheco, MA Nowak (2007). Evolutionary graph theory: breaking the symmetry between interaction and replacement. J theor Biol 246: 681-694. PDF

  • Traulsen A, Y Iwasa, MA Nowak (2007). The fastest evolutionary trajectory. J theor Biol 249: 617-623. PDF

  • Traulsen A, MA Nowak (2007). Chromodynamics of cooperation in finite populations. PLoS ONE 2(3): e270. PDF

  • Traulsen A, MA Nowak, J Pacheco (2007). Stochastic payoff evaluation increases the temperature of selection. J theor Biol 244: 349-356. PDF

  • Traulsen A, JM Pacheco, MA Nowak (2007). Pairwise comparison and selection temperature in evolutionary game dynamics. J theor Biol 246: 522-529. PDF

  • Uehara T, Y Iwasa, H Ohtsuki (2007). ESS distribution of display duration in animal contests to assess an opponent before fighting or fleeing. Evol Ecol Res 9: 395-408. PDF

  • Willensdorfer M, R Burger, MA Nowak (2007). Phenotypic mutation rates and the abundance of abnormal proteins in yeast. PLoS Comput Biol 3: e203. PDF

  • Xavier J, K Foster (2007). Cooperation and conflict in microbial biofilms. Proc Natl Acad Sci USA 104: 876-881.

2008

  • Bomze I, C Pawlowitsch (2008). One-third rules with equality: second-order evolutionary stability conditions in finite populations. J theor Biol 254: 616-620. PDF

  • Clayton P (2008). Contemporary philosophical concepts of laws of nature: the quest for broad explanatory consonance. In F Watts ed., Creation: Probability and Law. Fortress Press.

  • Coakley S (2008). Why gift? Gift, gender, and Trinitarian relations in Milbank and Tanner. Scottish Journal of Theology 61: 224-235.

  • Dingli D, MA Nowak (2008). Evolutionary dynamics of cancer. Book review of Dynamics of Cancer: Incidence, Inheritance, and Evolution, SA Frank. Trends Ecol Evol 23: 254-255. PDF

  • Dreber A, MA Nowak (2008). Gambling for global goods. Proc Natl Acad Sci USA 105: 2261-2262. PDF

  • Dreber A, DG Rand, D Fudenberg, MA Nowak (2008). Winners don't punish. Nature 452: 348-351.
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  • Fu F, C Hauert, MA Nowak, L Wang (2008). Reputation-based partner choice promotes cooperation in social networks. Phys Rev E 78: 026117. Republished in Virtual Journal of Biological Physics Research 16(5). PDF

  • Hauert C, A Traulsen, H Brandt, MA Nowak, K Sigmund (2008). Public goods with punishment and abstaining in finite and infinite populations. Biological Theory 3(2): 114-122. PDF

  • Hauert C, JY Wakano, M Doebeli (2008). Ecological public goods games: cooperation and bifurcation. Theor Popul Biol 73: 257-263. PDF

  • Jones S, W Chen, G Parmigiani, F Diehl, N Beerenwinkel, T Antal, A Traulsen, MA Nowak, C Siegel, VE Velculescu, KW Kinzler, B Vogelstein, J Willis, SD Markowitz (2008). Comparative lesion sequencing provides insights into tumor evolution. Proc Natl Acad Sci USA 105: 4283-4288. PDF

  • Langer P, MA Nowak, C Hauert (2008). Spatial invasion of cooperation. J theor Biol 250: 634-641. PDF

  • Nowak MA (2008). Generosity: A winner's advice. Nature 456: 579. PDF

  • Nowak MA, H Ohtsuki (2008). Prevolutionary dynamics and the origin of evolution. Proc Natl Acad Sci USA 105: 14924-14927. PDF

  • Ohtsuki H, MA Nowak (2008). Evolutionary stability on graphs. J theor Biol 251: 698-707. PDF

  • Pacheco J, A Traulsen, H Ohtsuki, MA Nowak (2008). Repeated games and direct reciprocity on graphs. J theor Biol 250: 723-731. PDF

  • Pinker S, MA Nowak, JJ Lee (2008). The logic of indirect speech. Proc Natl Acad Sci USA 105: 833-838. PDF

  • Traulsen A, N Shoresh, MA Nowak (2008). Analytical results for individual and group selection of any intensity. B Math Biol 70: 1410-1424. PDF

2009

  • Antal T, MA Nowak, A Traulsen (2009). Strategy abundance in 2x2 games for arbitrary mutation rates. J theor Biol 257: 340-344. PDF

  • Antal T, H Ohtsuki, J Wakeley, PD Taylor, MA Nowak (2009). Evolution of cooperation by phenotypic similarity. Proc Natl Acad Sci USA 106: 8597-8600. PDF

  • Antal T, A Traulsen, H Ohtsuki, CE Tarnita, MA Nowak (2009). Mutation–selection equilibrium in games with multiple strategies. J theor Biol 258: 614-622. PDF

  • Fu F, L Wang, MA Nowak, C Hauert (2009). Evolutionary dynamics on graphs: Efficient method for weak selection. Phys Rev E 79: 046707. PDF

  • Gokhale CS, Y Iwasa, MA Nowak, A Traulsen (2009). The pace of evolution across fitness valleys. J theor Biol 259: 613-620. PDF

  • Manapat M, H Ohtsuki, R Bürger, MA Nowak (2009). Originator dynamics. J theor Biol 256: 586–595. PDF

  • Nathanson CG, CE Tarnita, MA Nowak (2009). Calculating evolutionary dynamics in structured populations. PLoS Comput Biol 5: e1000615. PDF

  • Ohtsuki H, Y Iwasa, MA Nowak (2009). Indirect reciprocity provides only a narrow margin of efficiency for costly punishment. Nature 457: 79-82. PDF

  • Ohtsuki H, MA Nowak (2009). Prelife catalysts and replicators. Proc R Soc B 276: 3783-3790. PDF

  • Rand DG, A Dreber, T Ellingsen, D Fudenberg, MA Nowak (2009). Positive interactions promote public cooperation. Science 325: 1272-1275. PDF

  • Rand DG, MA Nowak (2009). Name and shame: How reputation could save the Earth. New Scientist 2734: 28-29. PDF

  • Rand DG, H Ohtsuki, MA Nowak (2009). Direct reciprocity with costly punishment: generous tit-for-tat prevails. J theor Biol 256: 45-57. PDF

  • Tarnita CE, T Antal, MA Nowak (2009). Mutation-selection equilibrium in games with mixed strategies. J theor Biol 261: 50-57. PDF

  • Tarnita CE, T Antal, H Ohtsuki, MA Nowak (2009). Evolutionary dynamics in set structured populations. Proc Natl Acad Sci USA 106: 8601-8604. PDF

  • Tarnita CE, H Ohtsuki, T Antal, F Fu, MA Nowak (2009). Strategy selection in structured populations. J theor Biol 259: 570-581. PDF

  • Taylor C, MA Nowak (2009). How to evolve cooperation. pages 41-56. In Games, Groups, and the Global Good, ed. S Levin. New York: Springer.

  • Traulsen A, C Hauert, H Brandt De Silva, MA Nowak, K Sigmund (2009). Exploration dynamics in evolutionary games. Proc Natl Acad Sci USA 106: 709-712. PDF

  • Wakano JY, MA Nowak, C Hauert (2009). Spatial dynamics of ecological public goods. Proc Natl Acad Sci USA 106: 7910-7914. PDF

2010

  • Bozic I, T Antal, H Ohtsuki, H Carter, D Kim, S Chen, R Karchin, KW Kinzler, B Vogelstein, MA Nowak (2010). Accumulation of driver and passenger mutations during tumor progression. Proc Natl Acad Sci USA 107: 18545–18550. PDF

  • Fu F, MA Nowak, C Hauert (2010). Invasion and expansion of cooperators in lattice populations: Prisoner's dilemma vs. Snowdrift games. J theor Biol 266: 358-366. PDF

  • Hill AL, DG Rand, MA Nowak, NA Christakis (2010). Emotions as infectious diseases in a large social network: the SISa model. Proc R Soc B 277: 3827-3835. PDF

  • Hill AL, DG Rand, MA Nowak, NA Christakis (2010). Infectious disease modeling of social contagion in networks. PLoS Comput Biol 6: e1000968. PDF

  • Imhof LA, MA Nowak (2010). Stochastic evolutionary dynamics of direct reciprocity. Proc R Soc B 277: 463-468. PDF

  • Manapat ML, IA Chen, MA Nowak (2010). The basic reproductive ratio of life. J theor Biol 263: 317-327. PDF

  • Nowak MA, CE Tarnita, T Antal (2010). Evolutionary dynamics in structured populations. Phil Trans R Soc B 365: 19-30. PDF

  • Nowak MA, CE Tarnita, EO Wilson (2010). The evolution of eusociality. Nature 466: 1057-1062. PDF

  • Ojosnegros S, N Beerenwinkel, T Antal, MA Nowak, C Escarmis, E Domingo (2010). Competition-colonization dynamics in an RNA virus. Proc Natl Acad Sci USA 107: 2108-2112. PDF

  • Rajamani S, JK Ichida, T Antal, DA Treco, K Leu, MA Nowak, JW Szostak, IA Chen (2010). Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication. J Am Chem Soc 132: 5880-5885. PDF

  • Yachida S, S Jones, I Bozic, T Antal, R Leary, B Fu, M Kamiyama, RH Hruban, JR Eshleman, MA Nowak, VE Velculescu, KW Kinzler, B Vogelstein, CA Iacobuzio-Donahue (2010). Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 467: 1114–1117. PDF

 
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